Betty van Aken

Hello, thanks for reaching out! From the error message it is unfortunately hard to tell where the error comes from. Can you give a bit more detail about which BioBERT...

Hello and thanks for your interest in our work! We have indeed experimented with calculating the class weights to balance the loss (with the `balance_classes` parameter in our repo which...

Hi Niall, right, I left that out because it was not part of the tuning. But surely important: we used a batch size of 20 for all the experiments. Best...

Yes, exactly!

Hi, Sorry, for only coming back to this now. It's been a while since I've worked on these topics. In general, for the diagnosis and procedure classification, the results were...

Hi Niall, Yes, the code is included in this repo. You would first need to generate the pre-training data from the scripts you can find in [the tasks folders](https://github.com/bvanaken/clinical-outcome-prediction/tree/master/tasks) `adm_dis_match_...`....

Hi, we have made some adjustments to the mortality prediction task in the meantime, because there were some cases left, for which the death of the patient was described in...