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Published 20 hours ago • verified publisher icon bvanaken

Replicating BioBERT Results - Mortality Prediction

Open kone807 opened this issue 2 years ago • 1 comments

hello,

we are trying to run the mortality prediction scripts on BioBERT model, however, we are encountering errors wrt the tokenizer.

farm_error

We also tried adding AutoTokenizer from hugging face in the tokenization.py file of FARM, but the error remained the same. Can you suggest us how can we go about using BioBERT here?

Thank you!

kone807 avatar Jun 13 '22 16:06 kone807

Hello, thanks for reaching out! From the error message it is unfortunately hard to tell where the error comes from. Can you give a bit more detail about which BioBERT (base or large) you are using and which parameters you pass to the training?

bvanaken avatar Jul 03 '22 08:07 bvanaken