clinical-outcome-prediction

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Reproducing diagnoses and procedures prediction results

2

Hi there. Amazing codebase by the way! I am trying to reproduce the results from your provided scripts and example configurations. However, I could easily reproduce the results for mortality...

junayed-hasan

Hi, I want to use the filter admission text function to have each category in a separate column. I want to apply this to the discharge summary of mimic-iv-note. However,...

edeiana23

Code for training the CORE model

1

Great work - although I am struggling to tell if there is the code for the pre-training of the CORE model? I.e. the training/knowledge integration steps described in the paper?...

NtaylorOX

Different Data Size

2

Hi. I ran mp/mp.py, but the data statistic is different with your result my train, valid, test is (33954, 4908, 9822) (original : 33997, 4918, 9830) My mimic3 version is...

sean0042

Replicating BioBERT Results - Mortality Prediction

1

hello, we are trying to run the mortality prediction scripts on BioBERT model, however, we are encountering errors wrt the tokenizer.  We also tried adding AutoTokenizer from hugging face...

kone807

Replicating results - Mortality Prediction

7

Hello - this is not a technical/code issue, rather a request for information. Amazing codebase by the way! I have successfuly rebuilt the datasets for each of the clinical-outcomes -...

NtaylorOX