Bui Hoang Phuc

I think you should delete the format .fa of sequences.fa into sequences only when make your own databases. Since abricate cannot identify sequences.fa in db.

I see. I usually do not use the hash_index argument but I think it is no problem. Did you try command? `abricate --setupdb` It will add your own databse into...

After you makeblastdb, you should type this command, not before!

Should you check the directory of miniconda3?. In my case, the abricate --list will list db in this folder: /lustre7/home/buihoangphuc412/miniconda3/db. Not from abricate database.