briarj

Hi, I'm running into errors in the seeksv getsv step. When running "seeksv getsv sample.clip.bam $file sample.clip.gz sample.sv.txt sample.unmapped.clip.fq.gz" it gives: _'InputSoftInfoStoreBreakpoint' finished Bam/sam sample.bam Mean insert size : 182...

Problem installing Delly

1

Hi. Trying to install Delly with: _git clone --recursive https://github.com/dellytools/delly.git cd delly/ make all_ But it gives me the following error: _g++ -std=c++11 -isystem Delly/delly/src/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS...