Brett Vanderwerff

Small thing but just a heads up that when using `?sleuth_prep` I am pretty sure there is a typo in the filter_fun description: "at least 5 estimated counts in at...

code optimization needed for parse links and other methods.

2

I tried to optimize some of the program by implementing multiprocessing with the parse_links method, but on some templates the program still takes several minutes to run. Any work on...

The flaskerizer can make both large and small structure flask apps by passing `large_app_Structure=True` or `large_app_Structure=False` during the instantiation of the StructureDirectory and WriteApp objects. Currently the testing files only...

Improve test coverage for the StructureDirectory class

2

We used to have good coverage for the methods of the StructureDirectory class in the structure_directory.py module. Most of these tests relied on comparing the output of the example "Alstar"...

Interestingly the template: https://www.feedmethemes.com/themes/html/logic-free-html5-multipurpose-business-template looks for font files in both the fonts folder and the css folder. There are 404 errors because of this that can be solved by simply...

I want to make this an official thread where people can post bootstrap templates that they have found not to work with the Flaskerizer. If a user posts a template...

Include information in README under setup and operation instructing the user that they can use zipped or unzipped templates

1

The program now works with zipped and unzipped bootstrap templates because of the closed pull request #18 , but the readme should let the user know that. This is a...

Provide testing coverage for the is_zip and unzip methods of the StructureDirectory class in the structure_directory.py module

1

This would be a good issue for someone new to testing. These two methods are new and need some tests. This might require some research, but we have a handful...

Thank you for making this repo. Is there any way to get the file specification for cluster files (EGT files) in addition to the one that is already provided for...

How is 'example.bpm.csv' created?

2

@jigold great project. I am wondering where 'example.bpm.csv' shown in your example inputs folder is produced from? Is it an export from genomestudio or a product of autoconvert? Oddly enough...