Brett Chapman

Thanks. I managed to generate a TSV formatted layout file. After running I now get a different error message: ``` gfaestus *.smooth-w400000-j10000-e10000-I0.9-p1_4_6_2_26_1.gfa *.smooth-w400000-j10000-e10000-I0.9-p1_4_6_2_26_1.chop.og.lay.tsv loading GFA loading GFA with 791 nodes,...

Hi, I've been trying to get the MoltenVK libraries installed on my Mac with no success. It doesn't look very straight forward to install the libraries. I've tried: ``` xcodebuild...

I realised I hadn't installed dependencies. So I tried this: ``` ./fetchDependencies --macos sudo make macos sudo make install ``` I still get the same error about libvulkan.1.dylib image not...

I'm getting the same problem with the title from my _config.yml file not being applied. I'm using the remote_theme. I swap out to other themes and the problem goes away,...

Hi @jonassibbesen Sure, I could upload the seqwish graph and GTF file to you. How can I get the files to you? Thanks.

Hi @jonassibbesen Thanks for your help. I've put the data on Google drive and have emailed you.

Is there a secret menu with autoindex where I can access these hidden parameters, like was mentioned here: https://github.com/vgteam/vg/issues/3303 Otherwise, how would I break down the steps in autoindex? Does...

I tried generating a GBZ graph, generating snarls and then indexing. However my job gets killed at the indexing step: ``` line 25: 1527790 Killed singularity exec --bind ${PWD}:${PWD} ${VG_IMAGE}...

To provide context. I only have pseudomolecules, so no contigs, only chromosomes 1 to 7, and I only have 20 haplotypes in the graph.

Thanks @ekg I used 1Mbp as the segment length, so it's already quite a long segment length. Could I use vg prune like outlined in this old issue: https://github.com/vgteam/vg/issues/1879 Would...