seqcover
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brentp
seqcover allows users to view coverage for hundreds of genes and dozens of samples
Hi Brent, Not sure if there's time and/or funding for this, but what would you think about converting this to /adding a MultiQC plugin for this project? (Talking about a...
Hi Brent, I am trying to run below command seqcover report --genes LEPR,MC4R --fasta /gpfs/data_jrnas1/ref_data/Homo_sapiens/hs37d5/Sequences/WholeGenomeSequence/hs37d5.fa temp/*.bed.gz -r my_genes_report.html --hg19 I don't have internet access from my nodes. I think I...
currently, a single sample with high coverage makes it impossible to see variation in other samples. a user can zoom on the y-axis, but we can add a checkbox/toggle that...
When a user changes the metric for the heatmap to CDS bases below 7 the color scale essentially inverts. Blue becomes well covered and yellow low covered. I think we...
with large cohorts or large number of genes, serializing to json becomes the slowest part of the command-line tool. switch to use [jason](https://github.com/disruptek/jason) instead of stdlib.