teaching
teaching copied to clipboard
bpucker
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
Teaching Overview
Teaching at TU Braunschweig
PuckerLab website: Pucker lab website at TU Braunschweig
MB09 - Introduction to Biochemistry and Bioinformatics of Plants
Material used in this course can be found here.
GE31/MM12 - Applied Plant Genomics
Material used in this course can be found here. Scripts and instructions of the bioinformatics component are available here.
GE32/MM12 - Data Literacy in Plant Sciences
Material used in this course can be found here. Scripts and instructions of the bioinformatics component are available here.
BB34 - Python for Life Scientists
Material used in this course can be found here.
FRX - Data Literacy in Genome Research / Genomics
Material used in this course can be found here.
GE33 - Applied Plant Transcriptomics
Material used in this course can be found here.
LMChemBSc-12 - Molecular Plant Biology for Food Chemists (in preparation)
Material used in this course can be found here.
iGEM @ TU Braunschweig
iGEM2023 @ TU Braunschweig
PuckerLab is hosting the TU Braunschweig iGEM team 2023.
iGEM2022 @ TU Braunschweig
PuckerLab hosted the TU Braunschweig iGEM team 2022.
Teaching at Bielefeld University (CeBiTec)
Applied Python Programming for Life Scientists
The intention of this course is to enable life scientists with different backgrounds to solve their own data analysis issues by writing Python scripts for the automatic processing. Evaluation results of this course are discussed here. All materials are available for re-use (CC-BY 4.0).
Applied Python Programming for Life Scientists - github repository
Applied Genome Research
This course provides an overview of bioinformatic methods frequently used in genome research. Participants run all analysis on real data sets. Evaluation results of this course are discussed here. All materials are available for re-use (CC-BY 4.0).
Applied Genome Research - github repository
Molecular Methods in Genome Research
This course provides an overview of molecular biology methods frequently used in genome research. Participants run all analysis on real data sets. Each participant is performing a different experiment. Evaluation results of this course are discussed here. All materials are available for re-use (CC-BY 4.0).
Molecular Methods in Genome Research - github repository
Synthetic Biology (iGEM): Bielefeld-CeBiTec
iGEM is the biggest synthetic biology competition for students. Teams from Bielefeld are participating since 2010. Detailed information about iGEM at the Center for Biotechnology (CeBiTec) at Bielefeld University is available here:
Bielefelder certificate of higher education
In 2017, I received the Bielefelder Certificate in Higher Education. Details are available here (in German). A description of my teaching project is available here (in German).
Fellowship Digital innovations in higher education
A fellowship provided by the Stifterverband supported the development of a digital lab book for practical courses in the life sciences. 'Molecular Methods in Genome Research' was implemented as part of this fellowship. A detailed project description can be found here (in German).
References
Teaching publications
Friedrich, A., & Pucker, B. (2018). Peer-review as a teaching method. Working Paper der AG Forschendes Lernen in der dghd, 2, 2018. Carl von Ossietzky Universität Oldenburg.PDF
Pucker, B. Schilbert, H.M., Schumacher, S.F. (2019). Integrating Molecular Biology and Bioinformatics Education. Journal of Integrative Bioinformatics. doi:10.1515/jib-2019-0005.
Data set publications
Pucker, B., Holtgräwe, D., Rosleff Sörensen, T., Stracke, R., Viehöver, P., and Weisshaar, B. (2016). A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny. PloS-ONE 11:e0164321. doi:10.1371/journal.pone.0164321.
Haak, M., Vinke, S., Keller, W., Droste, J., Rückert, C., Kalinowski, J., & Pucker, B. (2018). High Quality de novo Transcriptome Assembly of Croton tiglium. Frontiers in Molecular Biosciences, 5. doi:10.3389/fmolb.2018.00062.
bpucker