Brett Trost

Ah, that is probably it! Thanks so much. Just to clarify, if I want truth and query to be treated exactly the same, would I use both --preprocess-truth and --usefiltered-truth?...

Sorry about that - the VCF module was indeed missing. I have just uploaded it. Cheers, Brett

Hi, Unfortunately I cannot tell offhand from the error messages. Are you able to share your CNVnator and ERDS files that you are using so I can test it myself?...

Ah - I suspect it is because you are using the VCF version of the CNVnator calls rather than the tab-delimited version. The script expects the tab-delimited version. (However, the...

Can you send me the actual files you used? You could include just the headers plus the first three non-header lines in each file. I think this should be enough...

For some reason, I cannot see the attachments. Can you send them as a regular e-mail to [email protected]? Thanks!

Hi Jaehyun, I just wanted to clarify about the use/non-use of samples with PCR+ library prep in Trost et al 2020. We did some initial QC comparing different sequencing platforms...

Hi JaeHyun, I am not completely sure I understand your question, but let me try to answer. Are you wanting to take loci detected by EHdn and genotype them using...

Hi, Here is the Python code to do that. The ComputeCanonicalRepeatUnit function takes as input the sequence of a motif and returns the canonicalized version of the motif. For example,...

> Thanks for bringing this to our attention, will update the package with a fix shortly. Hi, Was a fix found/implemented for this?