signac

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Update venice.R

1

- Some functions in Seurat package were exported

ptdtan

Hello, I am trying to find the marker genes of a certain cluster with respect to all other clusters in my Seurat v3 object. In order to do this, I...

jctac

Control for covariates

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Is it possible to control for covariates/latent variables (categorical and continuous variables) during DE?

royfrancis

VeniceFindMarkers() returning error

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Hello, I am trying to run VeniceFindMarkers on a Seurat v3.1.5 integrated object with the default assay as SCT. Below is the line I'm trying to run. `VeniceFindMarkers(object = integrated,...

jctac

Hi, thanks for the very interesting package, I wanted to try it but when installing with devtools i get a bunch of warnings at the compilation stage. the last one...

bio-la

CoveragePlot( object = pbmc, region = rownames(da_peaks)[c(1,5)], sep = c(":", "-"), annotation = EnsDb.Hsapiens.v75, extend.upstream = 20000, extend.downstream = 20000, ncol = 1 ) This function has error when I...

JiFansen