mychem.info
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MyChem.info: A BioThings API for chemical/drug annotations
URL: https://gsrs.ncats.nih.gov It provides a downloadable `.gsrs` file. And this file is essentially a compressed 7-zip file with a list of JSON objects. NOTE: GSRS resource is likely a successor...
As shown in this example: https://mychem.info/v1/query?q=bromazin&fields=pharmgkb * **generic_names** & **trade_names** fields should be a list * **dosing_guideline**: check if it can be a True/False boolean field * fields under **xrefs**...
E.g. on [`CHEMBL1201631` Compound Report Card](https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL1201631/), there is only one drug mechanism record. However, [http://mychem.info/v1/chem/CHEMBL1201631](http://mychem.info/v1/chem/CHEMBL1201631) shows two. The duplication comes from the original source file, [https://www.ebi.ac.uk/chembl/api/data/mechanism.json](https://www.ebi.ac.uk/chembl/api/data/mechanism.json). Same problem may occur...
UNII data source dumper is here: https://github.com/biothings/mychem.info/blob/master/src/hub/dataload/sources/unii/unii_dump.py and from @andrewsu: > looks like that dumper gets the `UNII_Data.zip` file on that page. In addition `UNIIs.zip` could be useful. For example,...
Consider the following query on 'siltuximab': http://mychem.info/v1/query?q=CHEMBL1743070&fields=drugcentral The drugcentral id for this compound is 4977 but this id is not present in the API results: http://drugcentral.org/drugcard/4977?q=siltuximab The Chembl Id 'CHEMBL1743070'...
## Version ```python obonet==0.3.0 ``` ## Related To - [Issue#83](https://github.com/biothings/mychem.info/issues/83) - [PR#106](https://github.com/biothings/mychem.info/pull/106) ## Priority **Low**. Currently it's not an issue. Maybe an issue in the future. ## Problem The `def`...
The code reads the data files and writes the unique CS and MOA values from the pharm_classes into a list. The lists are in two separate files for easier viewing....
The merging of multiple records in source databases into a single record in mychem.info is a challenging process, and one where I doubt we'll ever get it perfectly "right". Having...
Currently `fda_orphan_drug` is the only plugin under the [plugins](https://github.com/biothings/mychem.info/tree/master/src/plugins) folder. It also relies on upstream data processing described in Sander's [fda_orphan_drug](https://github.com/r76941156/fda_orphan_drug) repo. Shall we upgrade it into an advance plugin,...
Right now, the NDC plugin is using the `RootKeyMergerStorage` class, to join documents with duplicate `_id` (productndc) values. However, with this method, it seems like a lot of information is...
