mychem.info

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I have been working on identifying the active ingredients of drugs coded with National Drug Codes, and was wondering if we wanted to include this information in MyChem? The project...

veleritas

Load rxnorm. scrape API, example: https://rxnav.nlm.nih.gov/REST/rxcui/595060/allProperties.xml?prop=all

stuppie

ChEBI additional fields

1

CAS is missing from [SDF file](ftp://ftp.ebi.ac.uk/pub/databases/chebi/SDF/) but is present (along with many other xrefs) in the obo/owl files: ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.obo.gz ``` [Term] id: CHEBI:15578 name: (25S)-5beta-spirostan-3beta-ol alt_id: CHEBI:178 alt_id: CHEBI:10854 alt_id:...

stuppie

This is very minor and low priority. I found myself many times to click into [data](/biothings/mychem.info/tree/master/src/data) folder instead when I actually wanted to go to [hub](/biothings/mychem.info/tree/master/src/hub) folder. Probably just because...

newgene

Add pharos id as xrefs

1

kevinxin90

Trouble linking aeolus compounds

3

If I do a simple query q=siltuximab, I get 5 results, with these identifiers and keys: ``` 57894-421 ['_id', '_score', 'ndc'] 57894-420 ['_id', '_score', 'ndc'] CHEMBL1743070 ['_id', '_score', 'chembl', 'drugcentral']...

cbizon

import CMap/LINCS data

2

CMap should provide gene expression measurements associated with chemical compounds. In theory, that data should be accessible via https://clue.io/cmap, but on first glance it is unclear how one can actually...

andrewsu

New data source: Guide to Pharmcology

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http://www.guidetopharmacology.org/download.jsp CC-BY-SA

newgene

New Data Source: HMDB

1

http://www.hmdb.ca/metabolites/HMDB0000012

kevinxin90

https://comptox.epa.gov/dashboard Looks like they do some aggregation among other resources, but they also have new data of their own. Downloadable files here: https://comptox.epa.gov/dashboard/downloads

andrewsu