mychem.info

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[This PubChem record](https://pubchem.ncbi.nlm.nih.gov/compound/142582737) (InchiKey: WRSNFEVXRKOMLL-UHFFFAOYSA-N) lists "SRI-37330" as a synonym. But that synonym (nor any synonyms) is not listed in the corresponding mychem record https://mychem.info/v1/chem/WRSNFEVXRKOMLL-UHFFFAOYSA-N, which means that this free-text...

andrewsu

Adverse reaction data from MedEffect Canada

3

More info here: https://www.canada.ca/en/health-canada/services/drugs-health-products/medeffect-canada/adverse-reaction-database.html zip file download here: https://www.canada.ca/en/health-canada/services/drugs-health-products/medeffect-canada/adverse-reaction-database/medeffect-canada-caveat-privacy-statement-interpretation-data-search-canada-vigilance-adverse-reaction-online-database.html ``` Archive: extract_extrait.zip Length Date Time Name --------- ---------- ----- ---- 24844376 2019-10-28 10:20 cvponline_extract_20190731/drug_product_ingredients.txt 1351083 2019-10-28 10:20 cvponline_extract_20190731/drug_products.txt 121 2019-10-28...

andrewsu

Update DrugBank with its vocabulary data

2

Thanks to @rjawesome, we now know the existence of [DrugBank Vocabulary](https://go.drugbank.com/releases/latest#open-data) data. They can be used to update our Drugbank API. P.S. there is an SDF file of drug structures...

erikyao

MyChem query endpoint should return a subset of field by default

2

Similar to how mygene.info/v3/query behavior. By default, the matching hits return a subset of "essential fields" by default, instead of all available fields. This will return hits much smaller and...

newgene

DataTransform not joining some documents that belong together

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I have found several documents from aeolus, unii, and ginas that belong together with documents from chembl/pubchem via primary key. For example, http://mychem.info/v1/chem/22T8Z09XAK and http://mychem.info/v1/chem/XNCKCDBPEMSUFA-UHFFFAOYSA-N both refer to the same...

ravila4

Current structure: ```json { "molecule_synonym": "DNDI996469", "syn_type": "OTHER", "synonyms": "DNDI996469" }, { "molecule_synonym": "DNDI996469", "syn_type": "RESEARCH_CODE", "synonyms": "DNDI996469" } ] ``` 1. Should be grouped based on "syn_type" 2. "syn_type"...

kevinxin90

Status code 400 (bad request) if more than 1000 IDs are posted to the chemical annotation service

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API involved: - URL: http://mychem.info/v1/chem - HTTP method: POST Per the [document](https://docs.mychem.info/en/latest/doc/chem_annotation_service.html#id2): > **ids**: Required. Accept multiple chemical ids separated by comma, e.g., “ids=SDUQYLNIPVEERB-QPPQHZFASA-N,SESFRYSPDFLNCH-UHFFFAOYSA-N,SHGAZHPCJJPHSC-ZVCIMWCZSA-N”. Note that currently we only take...

erikyao

new data source: dgidb

2

drug-gene interaction database downloads page: http://www.dgidb.org/downloads

andrewsu

new data source: DSigDB

1

http://tanlab.ucdenver.edu/DSigDB/DSigDBv1.0/geneSearch.html

newgene

Cui code instead of snomed

3

 Hello i wonder what 'snomed' link you are using normally the most interesting code to use is the 'cui' since this is the concept unique identifier Where all synonyms...

plarmuseau