rnacocktail

rnacocktail copied to clipboard

I was running RNACocktail for RNA quantification using shell command below: ``` # ${SRR} stands for SRR accession of the sample run_rnacocktail.py quantify \ --quantifier_idx /home/data/refdir/index/salmon/hg38_index \ --1 ./sra/${SRR}_1.fastq.gz \...

Baytars

Hi, there The rnacocktail is an excellent and comprehensive software to do the RNA-seq analysis. As we all know the third-generation sequencing (such as the Pacbio) has more power in...

Huangyizhong

Keep moving

4

RNAcocktail is a very impressive tool to process almost all kinds of analyses based on RNA-seq data. But the tools integrated in the RNAcocktail has not been updated for a...

chunjie-sam-liu

docker test fails on fusioncatcher in 0.3.0

1

When running docker_test.sh + mkdir fusioncatcher_data + cd fusioncatcher_data + wget https://sourceforge.net/projects/fusioncatcher/files/data/human_v95.tar.gz.aa --2019-11-20 20:51:01-- https://sourceforge.net/projects/fusioncatcher/files/data/human_v95.tar.gz.aa Resolving sourceforge.net (sourceforge.net)... 216.105.38.13 Connecting to sourceforge.net (sourceforge.net)|216.105.38.13|:443... connected. HTTP request sent, awaiting response... 404...

droeatumn