Juan Felipe Ortiz

**Welcome to the HiCExplorer GitHub repository! Before opening the issue please check that the following requirements are met :** - [x] Search whether this issue (or a similar issue) has...

AGC run fails when empty strings in inputs.json file

4

[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** If the inptus.json of a workflow contains empty strings ```json...

Can I get the list of actual commands that are used to run this pipeline? I have been growing increasingly frustrated by this snakemake implementation. Some jobs are aborted with...

mapq filter

3

Hello. (edited for clarity) I was wondering if it is possible to specify the mapq threshold for read filtering in pore-c-snakemake. Now, I have to calculate all those stats (contacts...

error in download_juicebox (missing directory)

2

I found that the pipeline was failing when downloading juicer_tools. Since the log file was empty, I figured I run the wget commant myself. The error I found is "no...