Juan Felipe Ortiz

I have a similar problem, though in my case, part of the `reconfigured-script.sh` says `/tmp/scratch//tmp/scratch/cromwell.results/cromwell-execution/Variants/e83d62c8-c896-45ee-806c-30c75d0e183f/call-coCleaning/coCleaning/dee9d53e-f865-436e-ad1b-499d848852ac/call-applyRecalibration/shard-0/recalibrated.bai` any ideas on how to resolve this? Thanks!

I am seeing a similar behavior with cromwell. I give a task 64GB. In AWS batch, I see the following warning next to the Memory information ``` Configuration conflict This...

It is still an issue with v 1.5.2 (cromwell)

Thanks, I am running the new pipeline now. I was a bit confused about the output. I can't see a `.contacts.parquet` file, but a `.contacts.parquet` directory inside `merged_contacts`. I am...