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Nanopore analysis pipeline

Nextflow pipeline for analysis of Nanopore data from direct RNA sequencing. This is a joint project between CRG bioinformatics core and Epitranscriptomics and RNA Dynamics research group.
The current version is the 1.1. The original 1.0 published in the paper is here

New DSL2 version of Master Of Pores is out!!

We translated the pipelines using DSL2 and added a new pipeline!! A lot of improvements and bug fixes! https://github.com/biocorecrg/MoP2

Documentation

Please read the documentation here: https://biocorecrg.github.io/master_of_pores/

Reference

If you use this tool, please cite our paper:

"MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets" Luca Cozzuto, Huanle Liu, Leszek P. Pryszcz, Toni Hermoso Pulido, Anna Delgado-Tejedor, Julia Ponomarenko, Eva Maria Novoa. Front. Genet., 17 March 2020. https://doi.org/10.3389/fgene.2020.00211

Contact

Please open an issue if you encounter any issues/troubles. However, please go over the previous issues (including closed issues) before opening a new issue, as your same exact question might have been already answered previously. Thank you!