BIRDMAn

Bayesian Inferential Regression for Differential Microbiome Analysis (BIRDMAn) is a framework for performing differential abundance analysis through Bayesian inference.

See the documentation for details on usage.

For an example of running BIRDMAn - see this Google Colab notebook.

Installation

Currently BIRDMAn requires Python 3.8 or higher.

We recommend using mamba for installation of dependencies.

mamba install -c conda-forge biom-format patsy xarray arviz cmdstanpy
pip install birdman