bioconda-utils

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On OSX CI nodes, $HOME isn't set in new shells, which always causes headaches for things like rust (e.g., https://github.com/bioconda/bioconda-recipes/pull/34374 ). We can set $HOME before running bioconda-utils, but that...

dpryan79

fix: allow finding dependencies on subpackages in dag

1

I just quickly edited on Codespaces, so this is untested. Does not fix the general problem. Only fixes one way when a package depends on a subpackage. Does not handle...

jpfeuffer

Wrong quay image requested when attemping test locally due to different format version.py generated by versioneer

11

Cross posting [this issue from bioconda-recipes](https://github.com/bioconda/bioconda-recipes/issues/32833). I posted it initially over-there as it was a result of following the "contributing to bioconda" procedure, but given that this is a bug...

DrYak

bioconda-utils autobump throws cryptic info/error `nextclade has selector in line %i (replace failed)`

4

I'm trying to use `bioconda-utils autobump` to version bump `nextclade` but it doesn't work. I get the following message in logs (level INFO): `nextclade has selector in line %i (replace...

corneliusroemer

When building t-mae https://github.com/bioconda/bioconda-recipes/pull/31069 I had an issue with `bioconductor-rhdf5`. Fixing the recipe in the same PR (3 recipes got changed) still ended up with a failed build since t-mae...

c-mertes

complains about valid use of `insteadOf` in my .gitconfig

1

In sections that do not pertain to my use of bioconda-utils ``` $ bioconda-utils autobump recipes/ config.yml --packages cwltest --create-pr […] 14:11:41 BIOCONDA ERROR Dropping into debugger Traceback (most recent...

mr-c

As requested [here](https://github.com/bioconda/bioconda-recipes/pull/29242#issuecomment-868365131), It would be useful to have 'guidelines' or FAQ entry to describe solutions for packages of Java tools that have GUIs, but downstream conda-derived docker or singularity...

jfy133

Hi, It seems the conda build system isn't tracking new releases for the wisecondorX package. Is there anything I can do to resolve this? Thanks M ping @mbargull xref https://github.com/bioconda/bioconda-recipes/pull/29015

matthdsm

duplicate_key_in_meta_yaml doesn't respect selectors

5

This is understandable given how it's done, but when `yaml.load` hits a duplicate key it throws an error that's passed on as a linter error that can't be skipped. That's...

dpryan79

Try to render the recipe again if it requires downloading source

3

Preserves the faster path for most recipes by not downloading source, but now allows recipes to use some of Conda's recipe features which require source (e.g. load_setup_py_data()).

tsibley