bids-specification

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BEP: Make proc filename keyword optional for other (T1, EPI, etc) modalities

3

Continuing my trend (#47) of demands, I would like to add `_proc` to the campaign. The original usecase (https://github.com/nipy/heudiconv/issues/266) is NORMalized (intensity normalization performend by the scanner software) T1w and...

yarikoptic

Generalize AcquisitionDuration to any MR scan

3

Via @jcohenadad @ https://neurostars.org/t/why-should-acquisitionduration-and-repetitiontime-be-mutually-exclusive/21153 > In the context of anatomical data (T2starw), we need to access the total acquisition time (a.k.a. “TA”) in order to compute SNR per unit time...

effigies

[ENH] Add a Consistency principle to Common principles

8

Explicitly adds a new Consistency principle which I think is implicit in the motivation and other principles. Still, I believe we need to make it explicit to establish a shared...

oesteban

[MISC] Generalize rules that labels must be used consistently

8

- relates to #1314

Remi-Gau

[MISC] Sort subsections within sections alphabetically

3

I was feeling the need for it each time I was navigating BIDS, but seeing https://github.com/bids-standard/bids-specification/pull/1128/files#diff-98d0f806abc9af24e6a7c545d3d77e8f9ad57643e27211d7a7b896113e420ed2 suggesting the same made me propose it. I think having subsections sorted where there...

yarikoptic

[ENH] Add reference volumes to common imaging derivatives

6

It was discovered that fmriprep, aslprep and qsiprep all generate `ref` volumes for their respective input modalities. Here is an initial proposal. I do not think we need any additional...

effigies

[FIX] Re-align the text and the schema for filenames in derivatives

4

I initially set out to add the `desc` entity to the filename templates for segmentations (in [the 'Segmentations' subsection](https://bids-specification.readthedocs.io/en/stable/05-derivatives/03-imaging.html#segmentations)), since the BIDS spec says [here](https://bids-specification.readthedocs.io/en/stable/05-derivatives/01-introduction.html) that: > When necessary to...

mguaypaq

Allow for .nwb standard/file format to be used for "micr"

9

See https://pynwb.readthedocs.io/en/stable/tutorials/domain/ophys.html for support of various microscopy modalities within NWB. As NWB is already supported for other modalities, there is some support for microscopy in NWB in various tools, and...

yarikoptic

[ENH][Documentation][Schema] Add Template Schema for BEPs

1

It would be useful to have a skeleton or a template of the schema portion of a BEP. Something similar to the [`books`](https://handbook.datalad.org/en/latest/basics/101-102-populate.html) dataset on datalad. This documentation would live...

bendhouseart

BIDS motion format - EUROBENCH format

5

Dear BIDS community, I am writing to express my interest and support for the BIDS motion standardization effort, which I learned about from @guiomar. I agree that designing formats that...

jorgomezga