bids-specification

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[BUG] The required metadata in qMRI fieldmaps not incorporated into schema

1

### Describe your problem in detail. Dear BIDS community, [Recently](https://github.com/CyclotronResearchCentre/bidsme/issues/17) we discovered that the required metadata for [qMRI field maps](https://bids-specification.readthedocs.io/en/v1.8.0/appendices/qmri.html#field-maps) is absent in schema (at least in v1.10.0). A quick...

nbeliy

Formalize specification of shape(s) (AKA contour(s))

3

## Problem space It came up in the scope of working on https://bids.neuroimaging.io/bep032 , which is currently being transferred from google doc into - #1705 in the need to describe...

yarikoptic

NF: tools/text2filetree.py helper to convert some indented text into our filetree example spec

2

See included within script tests It was produced pretty much fully by just interacting with Claude . chatgpt got stuck on inability to run tests itself (although it did try!)....

yarikoptic

ATM we duplicate values from schema into calls to MACROS___make_metadata_table, e.g. in https://github.com/bids-standard/bids-specification/blob/5b4b0fdb427987c38859b0cd14dd2f5057a854cb/src/modality-agnostic-files.md?plain=1#L21 ``` {{ MACROS___make_metadata_table( { "Name": "REQUIRED", "BIDSVersion": "REQUIRED", "HEDVersion": "RECOMMENDED", "DatasetLinks": "REQUIRED if [BIDS URIs][] are used",...

yarikoptic

Just discovered for myself (better later than never) the https://reuse.software/ which formalizes how (software) projects should include license and copyright terms. They even used to support DEP-5 (Debian way) but...

yarikoptic

Getting a lot of those. Should fix probably soon before it becomes too annoying. ``` FutureWarning: Downcasting behavior in `replace` is deprecated and will be removed in a future version....

Remi-Gau

'broken' internal link to glossary for sub-objects

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most errors left are related to subobects rendering: won't fix here https://app.readthedocs.org/projects/bids-specification/builds/26570977/#253898759--15 ``` INFO - Doc file 'modality-agnostic-files.md' contains a link './glossary.md#objects.subobject.Name', but the doc 'glossary.md' does not contain an...

Remi-Gau

Question: Should label-index mapping metadata be stored in the BIDS `*.tsv` file or OME-Zarr `zarr.json` file?

1

Hi BIDS team, We have annotated/segmented images and are trying to determine the best location to store the label-index mapping metadata. In the BIDS specification, a sidecar `.tsv` file or...

kabilar

A JSON-LD version of the dataset_description.json metadata for harmonizing with other data standards?

5

### Your idea Hi there - This is my first BIDS issue, so please feel free to close/reroute me if this is the wrong forum for this question! I work...

mekline

[ENH] use of n/a in `RECOMMENDED` fields

4

### Your idea Hi all, related to #876 i checked the issue tracker, but perhaps i missed something or it has been discussed before.. in this case, apologies! I encountered...

dominikwelke