Dr. Bruce Hashemian
Dr. Bruce Hashemian
Hi @ChristianEschen, This seems to be an intended behavior since if the sizes of images are different there is no trivial way to concatenate them (apart from some arbitrary choices...
@JHancox Thanks for providing the use case. Could you please elaborate a bit? - What is the purpose of that mask? - Is threshold filter each pixel of the tile...
Hi @KumoLiu, it might be. Please check and verify the requested features are already addressed in `ForegroundMask`. Thanks
@vikashg thanks for your input. We have recently addressed that in PR #4036, and now you should be able to pass `level` argument to extract patches at that level.
@gigony is there any update on this? thanks
Thank you, @gigony! Raising an error would satisfy the purpose of this open issue. Currently, we don't have any need for single-channel images in digital pathology but it might be...
@wyli , @Nic-Ma , could you please give me more info about the environment that is being run? I don't experience any problem when running locally (manually or via `./runner.sh`).
@wyli, I cannot reproduce it. I started from a clean docker and make exactly the same steps as [here](https://github.com/Project-MONAI/MONAI/blob/dd56514d28c5fbe08795676e150da0d1872f108c/.github/workflows/cron.yml#L207-L238) but everything went well! Are you sure this error log is...
@KumoLiu Could you please review items in the PR descriptions, check everything that you have already done, and remove any one that is not relevant (e.g. Breaking change...)?
@JHancox @Nic-Ma I agree. This is better suited for `monai/apps/pathology/loss/`.