bfurtwa

added support for individual cmaps for continous variables

7

As explained in plotting docs > The color map can also be set individually for each value in adata.obs and adata.var, by setting `adata.uns["{var}_cmap"]`. The individual values overwrite `color_map`. I...

Peptide Modification: RuntimeError: Dimension out of range (expected to be in range of [-1, 0], but got 1)

4

I used a dataset with modifications encoded as "1" and "2". [data.txt](https://github.com/horsepurve/DeepRTplus/files/2529426/data.txt) And the same data with all modified peptides removed. [data_no_mods.txt](https://github.com/horsepurve/DeepRTplus/files/2529430/data_no_mods.txt) With the modified peptides, I got this error:...

Prediction time scale

1

I trained a model with these parameters: conv1_kernel = 10 conv2_kernel = 10 min_rt = 0 max_rt = 61 time_scale = 60 max_length = 51 Is this model now restricted...

CPU vs. GPU speed

3

I'm training with a i5-2500 quad-processor. It does 4it/s and 1:15h/epoch. Approximately, how fast would the training be with a GPU?

collection$iterate()$batch(n=10000) returns "Error: Cannot advance a completed or failed cursor." instead of NULL when exhausted

3

I think when the iterator is exhausted it should return NULL.

XICs contain only every 2nd MS2 spectrum but all MS1 spectra

7

Is my observation correct that in the XIC parquet file and also in the viewer, not all MS2 spectra are included? It looks like around every 2nd MS2 spectrum is...