Bernat Gel

Hi @gbdias This is the expected behaviour. ymax willl tell kpPlotDensity to vertically scale the data so y=2 is at the top of the data panel, but it will not...

Hi again, It was a problem in the code. I've now added a new "coverage" object to the kp returned by kpPlotCoverage so you can do the same you do...

Hi TrentPrall, I'll take a look at that. At a first glance your code seems correct, but I might be missing something. I'll get back to you when I find...

Hi Trent, I tried your code with a bunch of random regions and it seems to work as expected, so I think this might have something to do with the...

Hi @motutaj If the genome is in UCSC, in theory, you should be able to work with it simply specifying genome="rn7". It will instruct you to install the corresponding BSgenome...

Hi @Baboon61, The representation of two different parts of the genome (other than whole chromosomes) in a single plot is no possible yet. It is in the todo list and...

Yes, then that should do the trick. El mié., 11 abr. 2018 9:44, Baboon61 escribió: > Hello @bernatgel , > Thanks for the reply > Unfortunatly I want to link...

Hi Mike, We do not have the option of reprensenting the point density in a similar way ggplot2 have. I can see your use case and it might make sense...

Hi Vic, That's not possible right now with the kpPlotManhattan function. I think it could be implemented fairly easily passing an array of colors and using one color per highlight...

Hi @RichardJActon karyoploteR uses base graphics and mimics its behavior in that it does not produce a grapgics object where you set all parameters and then plot it all at...