Ben Sherman
Ben Sherman
I use WSL, so GUI support is clunky. I got it to work, but I would like to be able to just copy the authentication URL into my native browser...
Spawned from the language improvements mega-discussion (#3107). The `file()` method can be used to load a single file or multiple files using a glob string, which means this function can...
Spawned from the language improvements mega-discussion (#3107). Operators that combine or group channels based on an index (i.e. `by` option) currently only support integer indices. They should also support string...
## Bug report ### Expected behavior and actual behavior When I use `${baseDir}` in my config file, it is properly recognized when I run my pipeline using `nextflow run`: ```...
After doing some digging I found that hyperqueue does have a concept of "job state" vs task state, but it doesn't include the job state in the JSON output for...
From some other discussions (#2113 #2682), it looks like some users like to use the following pattern: 1. start with a channel of tuples or maps 2. use `multiMap` to...
Fixed some typos in the `executor.retry.*` config docs, and some general language improvements to that section.
The following settings control the retry policy that Nextflow uses when calling the Azure Batch API: - Considerations re: how often a job status is checked (i.e Azure jobs being...
Closes #2264 Alternative solution to #2971 This PR changes the pbspro executor to ignore `cpus` and `memory` directives if `clusterOptions` contains `-l`. That way, you can do something like: ```...
Closes #2981 I basically just updated the `set` operator to return the input channel directly, for each channel type it supports. I'm not sure if that's the correct way to...