Ben Sherman

Add `trailingSemicolon` option

2

Close #16

Add support for Azure managed identity

17

Close #4871 Thanks @swampie for the minimal example. Is there any config required to authenticate with Azure Batch? Currently with this PR, no batch credentials will be provided if only...

Workflow output definition

52

Close #4670 This PR adds a DSL for defining workflow outputs. It is meant to completely replace the publishDir directive, and centralize the definition of published outputs into one location....

Allow multiple cluster options to be specified as a string list

1

Close #4935 - Allow `clusterOptions` to be a string or string list - Each list element is written to a separate line when required by the executor, otherwise the list...

Pin only major/minor plugin version with `+` suffix

19

Close #4329 This PR changes the plugin system to not download plugins in offline mode (`NXF_OFFLINE`). Instead, Nextflow will search the plugins directory for the latest plugin version and use...

Fix bug with tap op and value channel

2

This PR fixes a bug with the tap operator which causes it to hang forever when given a value channel. I also removed the IntoOp class as it is essentially...

Static types for process inputs/outputs

13

This PR is an exploration intended to add support for static types for process inputs and outputs. TODO: - [x] refactor runtime classes to be independent of DSL - [x]...

Add example of dynamic directive with input file

2

See https://github.com/nextflow-io/nextflow/pull/4493#discussion_r1397589519 I don't really like this particular example because it is probably an anti-pattern, i.e. many tools are designed to stream the input data so that they don't have...

Throw error if a process defines multiple inputs with the same name

12

Close #4366

Include FileHolder stage name in task cache

1

Close #4106