Ben Sherman
Ben Sherman
Fixed by https://github.com/nextflow-io/nextflow/commit/42504d3c83145e16179e22df83e9d35ecc995eca
Closing since we are moving away from kuberun. Use a workflow platform (e.g. Tower) to manage your submitter pods, or use Wave+Fusion to run Nextflow without a submitter pod /...
Hey Lon, your process definition is incorrect. Just remove the `resources:` and it should work: ```groovy process pim { container 'ubuntu:22.04' cpus '1' memory '100 MB' // disk '100 MB'...
Is it the exact same message? The original one was: > admission webhook \"[validation.gatekeeper.sh](http://validation.gatekeeper.sh/)\" denied the request: [container-must-have-limits-and-requests] container does not have requests defined\n[container-must-have-limits-and-requests] container does not have limits defined...
This error must be for the head job created by `kuberun`. You can specify the head job cpus and memory on the command line: ```bash ./nextflow kuberun https://github.com/DailyDreaming/k8-nextflow -v chaos-vol:/workspace...
Not sure either, I haven't seen that error before. Could be useful to inspect the yaml that was generated. Should be able to see it with `kubectl get pod -o...
There might be something wrong with your PVC. It should be bound to a persistent volume and also be `ReadWriteMany`.
Yes we need to merge #3027 to fix this issue
Release candidate for Funnel with TES 1.1 support: https://github.com/ohsu-comp-bio/funnel/releases/tag/0.11.0-rc.2
We're just trying to get TES Azure to work and then I think we'll merge