Ben Jeffery

Results 116 issues of Ben Jeffery

Using new `tskit-book-theme` The only question I have is whether this is acceptable: ![Screenshot from 2022-08-05 21-33-01](https://user-images.githubusercontent.com/8552/183158486-8afcda96-ce88-4f3d-b467-6de60ec1689d.png)

This branch will be used by the new website demo deploy to show how the docs will look. We can merge this PR whenever we are happy with the new...

We added time benchmarks in #2454, it would also be useful to record the peak memory usage. This [page](https://www.baeldung.com/linux/process-peak-memory-usage) lists a few ways to do this which look interesting: -...

Infrastructure and tools

It would be handy for notebooks and jupyterbooks to be able to set a style for `tskit` generated SVG and HTML in a given session. A method such as `tskit.set_svg_style(css_string)`...

Python API
Visualisation

Somehow this one got missed. Sorry @szhan!

documentation

Currently this results in an error: ```python >>> tc = tskit.TableCollection(1) >>> tc.individuals=tskit.IndividualTable() Traceback (most recent call last): File "", line 1, in AttributeError: can't set attribute ``` Is there...

enhancement
Python API

Advertise possibilities, advise of limitations and give an example of loading a ts from a URL and plotting it.

documentation

Something like `ts.node(metadata=('key', 'subkey', 'value')` would be a handy convenience to have. It would mean things like `ts.node(metadata=('name', 'es423'))` would work well or `ts.individual(metadata=('accession','id','BOB'))`. We considered hardcoding for example `ts.node(name="es423")`...

enhancement
Python API

3.11 betas are coming out, with this version having some breakage in the C API.

Python API
Infrastructure and tools

We need to explain what it means and how to use it.

documentation