Bérénice Batut

Results 77 issues of Bérénice Batut

Hi, For some already versioned files, it could be nice to be able to load a GitHub file into Monod and then save it again in GitHub. Thanks, Bérénice

feature request

Hi, It would be useful (for me at least) to be able to export the HTML file corresponding to a Slide deck. Thanks Bérénice

feature request

Ideas to improve the slide decks - Add taxonomy explanation - Add tree of life - Add explanation of the concept of community profile - Add more real use cases...

topic:metagenomics

I taught the metatranscriptomics tutorial last week. Here are some ideas to improve it 1. Change inputs data 1. To get more diversity to show 2. Use >=2 datasets 2....

topic:metagenomics

This PR: - Adds several tutorials (disabled with the PR to give time to review them after a pilot workshop) about pedagogy, tutorial design, training delivery, mostly based on the...

In: https://training.galaxyproject.org/training-material/topics/contributing/tutorials/create-new-tutorial-content/tutorial.html#adding-images-with-captions ![image](https://user-images.githubusercontent.com/1842467/156371480-0f313a14-2aa7-49af-b484-7d2c2c6e07c7.png) All Mardown snippets to explain how to add images are transformed into HTML, even with `{% raw %}`

We are working for more than 2 years now on paper to present the GTN to instructors. We think it is almost ready to be send. But we would like...

We plan to expand our catalogs of tutorials for whole-genome microbiome data analysis. Here are some ideas we will implement: - Expand the introduction slide deck to add more overview...

discussion
topic:metagenomics

FOR CONTRIBUTOR: * [X] - I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [X] - License permits unrestricted use (educational + commercial)...

Hi, I was testing `humann_genefamilies_genus_level` command within a Python3 environment and I got an error because of `iteritems` removed in Python3. I also added a functional test for this command....