Joel Beazer

When running diamond blastp in multiprocessing mode, some processes hang or segfault non deterministically.

2

I'm running diamond blastp in multiprocessing mode on multiple machines (gcloud c2-cpu-standard-60 machine, 60cpus, 260GB memory). Here is the specific command for the blastp search: `diamond blastp -q seqs.faa -d...

I want to split a large fasta into separate mmseqs dbs and then do a search in parallel over several machines. I want to make sure that the e-values are...

Linclust does not respect memory limit at the end of clustering.

4

I ran linclust on a machine with a relatively low memory limit compared to the memory limit on the size of the machine. While the linclust process is running, the...