Joel Beazer

Results 5 comments of Joel Beazer

Out of Memory Error: Failed to allocate block of 13230080 bytes

I don't quite understand the internals of duckdb memory allocation and have not been following the discussions here closely but wanted to add that I ran into a similar OOM...

Out of Memory Error: Failed to allocate block of 13230080 bytes

@szarnyasg @hawkfish Currently using Linux (Debian 12) with DuckDB v0.9.2 via the downloaded binary. Similar to @gawen, to disable Jemalloc, i downloaded the repo at the v0.9.2 release, commented out...

Out of Memory Error: Failed to allocate block of 13230080 bytes

This is entirely unhelpful to you because i can't actually provide the data but wanted to follow up on this. I have updated to build 0.10.0 and am still getting...

colabfold_batch misuses templates from pdb-hit-file when run locally

+1 Has this issue been addressed?

Linclust does not respect memory limit at the end of clustering.

A patch for this would be great since i don't think i have a machine at the moment that can manage all the accessions in memory at the same time.