BBTools
BBTools copied to clipboard
bbushnell
BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ other tools. Actively maintained by Brian Bushnell.
We're using shred to split a large fish chromosome into chunks. We've found that setting `length=550000000` gives us an error, but `length=500000000` works. ``` minlen=1, maxlen=-1 Input is being processed...
The current implementation of `RandomReadsMG` treats contigs as linear which prevents the generation of reads that span the (often arbitrary) start/end seam of circular elements. It would be very helpful...
Hello, When generating ONT reads with `RandomReadsMG.sh`, I found that some of the generated reads are shorter than the value specified by the `minlen` parameter. I suspect this is due...
Hi, I wanted to use the clumpify.sh module to estimate and remove optical duplicates from my fastqs but when I ran the command the number of reads in the output...
