Bart Charbon
Bart Charbon
I'm using VCF anno to annotate a INFO field of the float datatype: Input infofield: ``` ##INFO= ``` The resource contains values for this INFO field like: 1.4696171E-4 0.13309044 7.423004E-5...
### How to Reproduce - check the repo ### Expected behavior - one base class for Api tests ### Observed behavior - AbstractApiTest exists as well as AbstractApiTest**s** - functionality...
### How to Reproduce - in the menu manager make the "redirect plugin" the first menu item ### Expected behavior either a molgenis error message stating that you do not...
### How to Reproduce -Create a zip with a file that start with a dot or underscore and one that starts with a letter -Import using OCI ### Expected behavior...
### How to Reproduce - load typetest - navigate to metadatamanager - select xmref attribute (be aware: not the nullable variant) - update datatype to categoricalmref - save ### Expected...
Edit 14/03: verified that this also occurs in version 3.0.4 ### Description of the issue: When I add a header including a description containing escaped double quotes, sometimes the "escape...
For the pipeline we are using Sniffels in it would be really convenient to have genomic vcf support. Are there any plans to ass gvcf support in the future?
We're using expansion hunter 5.0.0 to call STRs. Based on the docs I would expect variant lines in the VCf to have a INFO field "SVTYPE=STR". The INFO/SVTYPE field vcfheader...
Dear @readmanchiu, We are using Straglr in our pipeline (https://github.com/molgenis/vip/) to call STR's on nanopore data. Since all the modules in our pipeline are build to have VCF input and...
Dear @readmanchiu, Some of the STR's we are interested in have a more complex pattern instead of a simple repeating sequence. e.g. something like (TTTTA){5}TTA(TTCTA){5} (5 TTTTA's followed by a...