Adding .g.vcf support

[bartcharbon]

For the pipeline we are using Sniffels in it would be really convenient to have genomic vcf support.

Are there any plans to ass gvcf support in the future?

[fritzsedlazeck]

Hey there, gVCF doesn't work on SV. However, sniffles2 implements something similar. You need to use the snf file tag on the per single sample calling and then the merge implemented in sniffles with these snf files directly. This will produce a fully genotyped VCF File. The command line documentation shows you how to do that. Cheers Fritz