Azza Althagafi

Failed to complete command task: 'generateCandidateSV_0000'

4

Greetings, I got the following errors with some real samples I have, not sure about the source of the error as the BAM files generated successfully, any advice? > [2020-02-25T23:07:54.845014Z]...

Reference genome mismatch: Reference fasta file is missing a chromosome found in the Normal BAM/CRAM file: 'ERCC-00002'

1

Greetings, I'm trying to run manta on the bam file (RMNISTHS_30xdownsample.bam) from: [https://github.com/genome-in-a-bottle/giab_data_indexes/blob/master/NA12878/alignment.index.NA12878_HiSeq_downsampled30X_GRCh37_10262015](url) I tried the human reference genome Homo_sapiens_assembly19.fasta But I got the following error: > CONFIGURATION ERROR: >...

Hello, I'm facing some issues in getting different results after training the model; the issue seems to be in line [1] in the way you assigned id for the classes....