Reference genome mismatch: Reference fasta file is missing a chromosome found in the Normal BAM/CRAM file: 'ERCC-00002'

[azzatha]

Greetings,

I'm trying to run manta on the bam file (RMNISTHS_30xdownsample.bam) from: https://github.com/genome-in-a-bottle/giab_data_indexes/blob/master/NA12878/alignment.index.NA12878_HiSeq_downsampled30X_GRCh37_10262015

I tried the human reference genome Homo_sapiens_assembly19.fasta

But I got the following error:

CONFIGURATION ERROR: Reference genome mismatch: Reference fasta file is missing a chromosome found in the Normal BAM/CRAM file: 'ERCC-00002'

Any advice? Thanks,

[dfc-1931475]

hello，have u solved this bug? I met the same error too, may u give me some advice？