Austin Richardson

Right now the most relevant commands are for clustering (`--usearch_local` and `--usearch_global`). nucleotide/aa detection is IMO a terrible idea (shouldn't the bioinformatician know what they are clustering?) but this feature...

Awesome. Let me know if I can help test.

That's great news! @torognes

> Sure. I would try the -subject option first instead of creating a blastdb. That seems like a better option. Forgot about this flag. > For 1-off searching I put...

Git receive will save the repositories in the home directory of the `$GITUSER` specified during installation. You could symlink a different directory to `/home/$GITUSER` so long as the receiver script...

Thanks! Anything to help replicate the paper would be helpful. I'm mostly interested in the vectorization of amino acid sequences and the (tensorflow?) implementation of the model.

selab.janelia.org is down for me or I'd try building it myself.

[Build failed installing infernal](https://hub.docker.com/r/sjackman/prokka/builds/bdxafp54rxjxj3srajkmech/). Looks like selab is still down. Do you know of another place to get Infernal? Maybe I can change the homebrew recipe to pull from a...

What do you think about installing BLAST with apt-get instead of Homebrew? Compiling takes forever...

Working on my own Docker image for Prokka. FYI - Prokka comes bundled with linux binaries for blast, hmmer, prodigal, and aragorn.