vt
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A tool set for short variant discovery in genetic sequence data.
hello, I tried #this will create a directory named vt in the directory you cloned the repository 1. git clone https://github.com/atks/vt.git #change directory to vt 2. cd vt #update submodules...
Hello! I have this conda environment with the following packages: ``` active environment : bioinformatics-env active env location : /Users/julia/miniconda3/envs/bioinformatics-env shell level : 1 user config file : /Users/julia/.condarc populated...
Hello! Dear author, do you plan a new release? There are many changes in master: https://github.com/atks/vt/compare/0.57721...master
If you have symbolic variants with the same chrom/pos/ref/alt but different SVLEN, they are treated as identical, meaning you silently drop symbolic variants Example VCF: ``` ##fileformat=VCFv4.1 ##INFO= ##INFO= #CHROM...