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A tool set for short variant discovery in genetic sequence data.
Hi I am using `vt decompose -s -d` on a VCF file and encountered an "Unexpected type 0" error without produced the resulting VCF ``` decompose v0.5 options: input VCF...
hi, I'm compiling the software, I used gcc 4.8.2 this is my error log: `cd lib/libdeflate; make || exit 1; make[1]: Entering directory `/psd/biosoft/compiled/vt/lib/libdeflate' CC lib/deflate_decompress.o /tmp/ccB26cYJ.s: Assembler messages: /tmp/ccB26cYJ.s:361:...
Good morning, Installation fails at "make" with the error message `/usr/bin/ld: cannot find -lcurl`. My system, as per `uname -a`, is `Linux ada 4.15.0-88-generic #88-Ubuntu SMP Tue Feb 11 20:11:34...
This issue has been raised in https://github.com/hyunminkang/vt-topmed/issues/1, but it seems that `vt-topmed` is an archive repo. I found a problem in prob2pl from log_tool.cpp: ``` uint32_t LogTool::prob2pl(double x) { if...
Mixed case FASTA and upper case REF still causes mismatch/skipping. This was mentioned in issue #46 at the end (after closing), and @lbeltrame provided a simple diff to fix it....
Hi, Thanks for creating this great toolset. This isn't really an error report, but rather a limitation to some of the underlying code, but I thought I'd check whether you...
when I run make it return an error: ```bash gcc -Wall -O3 -fPIC -DMATHLIB_STANDALONE -std=gnu99 -IRmath -DNDEBUG -c bessel_i.c -o bessel_i.o bessel_i.c: In function ‘I_bessel’: bessel_i.c:491: error: expected expression before...
Hello, I tried to install **vt** on Mac through homebrew and source and I ran into problem with both. According to the [wiki documentation](http://genome.sph.umich.edu/wiki/Vt) the classic use on mac is...
Hello, would it be possible to get the vt peek output in some easier to parse format? Anything like YAML/json will make things easier. Best, Darek Kedra
Hello Adrian Apparently the `decompose_blocksub` tool does not produce proper VCF's in respect to `REF` types. You can see this demonstrated [here](https://drive.google.com/open?id=1j1Vt66oE1GIhPJ80IbjsFpSbSKU6yW5x). The `filtered.vcf` has been produced by processing multiple...
