Anton Korobeynikov
Anton Korobeynikov
Hello First of all, it seems you're having lots of input reads. So this is going to take a while. However, the most important problem is as follows: ``` 0:00:00.001...
Will you please run `spades.py --test` on your system?
Well, likely something changed on your system / prevented SPAdes from run. crash effectively occurs during the startup of the binary. I would suggest you to contact your system administrator.
Hello This does not look good: ``` 4:37:59.802 78G / 346G INFO General (pair_info_count.cpp : 211) 584 paired reads (0.000138764% of all) aligned to long edges 4:37:59.900 77G / 346G...
> The insert size shown in the log could be affected due to the low amount of long reads that we have until now, but that we are increasing these...
> Yes, the reads were filtered with Q30 quality filter and the adapters were removed too. Have you used paired-end-aware trimmer tool? Do your left reads correspond to the right...
How much free RAM is available for your SPAdes job? Does `spades.py --test` run properly?
I'd suspect there is some I/O issue on the volume that your `/home` is located. Maybe it does not support memory-mapped files properly. I would suggest you to talk to...
Tagging @andreil99
Tagging @smithp35 @kbeyls It looks like that the method suggested in https://github.com/ARM-software/abi-aa/blob/main/pauthabielf64/pauthabielf64.rst#elf-marking is not quite convenient from dynamic loader perspective as it requires parsing of section table. The latter is...