Abdulrahman Salhab

guppy_basecaller with gpu: error while loading shared libraries: libcuda.so.1

5

Hello, I am trying to run nanoseq on our HPC with singularity. To do so, I created a conda environemnt and installed singularity (3.6.3) and nextflow (20.10.0). I changed `maksuashfs`...

STAR 2.4.0j with singularity gives segmentation fault error

3

Hi @emi80 I have been using grap-nf [10fde600ff] for long time with singulairty 3.6.3 and nextflow 20.10.0. Recently, I had to change to a new HPC environemnt. So, I donwloaded...

grape-nf does not execute some steps

2

Hi @emi80 I ran grape-nf with the following command inside a conda environment (However not all the tools were installed through conda): nextflow -c /home/abdosa/.nextflow/assets/guigolab/grape-nf/resource.config run -qs 1 -without-docker -w...

the link to the provided conda environemnt file is corrupted

1

Hi, it seems that the link to the conda environment is not working https://github.com/guigolab/grape-nf/blob/master/conda/grape-env.yml. Could you please correct the link? Best, Abdul