Abdulrahman Salhab

icon location Saarland university, Germany icon location Bioinformatician at Epigenetic department, Saarland University

Results 5 comments of Abdulrahman Salhab

guppy_basecaller with gpu: error while loading shared libraries: libcuda.so.1

Hello Matthias, it worked for me after changing `-profile singularity` option in my command to `-with-singularity` option and added `--nv` to `singularity.runOptions`. Sorry I didn't write the solution here since...

Methylation problem

most probably it is becasue you of the binSize=1. CpG methylation information is different compared to ChIP-seq where you have base-pair resoultion, while in methylation you have CpG resolution (two...

STAR 2.4.0j with singularity gives segmentation fault error

Hi @emi80, it seems as you suggested the image is corrupted. I tried to pull it again but I got the same error (segmentation fault). I rebuilt the image `grapenf-mapping-star-2.4.0j.img`...

STAR 2.4.0j with singularity gives segmentation fault error

any update on this issue @emi80 ?

grape-nf does not execute some steps

Hi @emi80 Thanks for your reply. It worked when I use `.fa` instead of `.fna` Best, Abdul