arumds

Error: Only few genes/proteins in the study are found in the background population.

6

I have been using GOA tools the latest zipped version, and getting the below error that only few input genes are in the background population. Is there a way to...

Improving run time performance

3

I am processing VCF file to split the columns until the INFO field (columns 1-9) into tab separated columns. The example input has 250K variants. To do this i am...

I have been using the svtools pipeline on my datatset where `lsort` `lmerge` and `genotype` have been implemented successfully. The coordinates file has been generated from the `lmerge` vcf file....

svtools Genotype + Key Error: 'END'

1

I have used the svtools protocol at https://github.com/hall-lab/svtools/blob/master/Tutorial.md . However, i am having the below error while using svtools genotype: Running svtyper with options: /svtools/bin/svtyper/svtyper --split_weight 1 -n 1000000 --disc_weight...

ERROR: Invalid parameters passed to getCandidateBreakPointsDir

2

Hi, I am getting the below error during `Calling` step: `Command: ./bin/retroseq.pl -call -bam /scratch/G300B1.bam -input /scratch/retroseq/sinec -ref /scratch/l1.0_ROSY.fa -output /scratch/retroseq/sinec.vcf -filter SINEC.refTEs.txt -reads 3 -depth 400` Tail of the...

I wonder if it is possible to run the gqt commands on remote data by providing urls? as this would solve a big hurdle of data transfers of huge VCF...

make Error in MacOS Sierra

2

I am compiling a gqt in mac and met with the below error. I have installed htslib succesfully and added the path in the gqt src/Makefile. Can anyone help to...