add other summary cohorts

[brentp]

e.g. UK10K: ftp://ngs.sanger.ac.uk/production/uk10k/UK10K_COHORT/REL-2012-06-02/ this will make max_aaf_all more powerful for whole-genome studies.

[arq5x]

Is it a VCF with frequencies? I can't open the link

[jxchong]

It is. VT decompose then we do something like

gemini annotate -f UK10K_COHORT.20140722.sites.VT.confint.vcf.gz -o min,min,min -t float,float,float -e AF,AF_lowCI,AF_upCI -c UK10K_AF,UK10K_AF_lowCI,UK10K_AF_upCI $INPUTPROJECT.VT.VEP.db

[jxchong]

I hear two WGS databases of ~20k samples each are coming out soonish.