Alexander Rose

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Really odd, I could not reproduce with any kind of settings in the normal Viewer. No idea what is going on in ME.

@giagitom I don't see the issue anymore - there were quite a few changes around shader compilation recently so I presume it got fixed along the way

That is an artifact from how post processing applied. The postprocessing is applied before the transparent pass is rendered. This is done to keep things more simple and reduce passes.

@giagitom that is fixed, right?

@giagitom still an issue?

Yes, it is a bit slow for that structure. Please check if #1509 has acceptable speed.

We assign bond order for known cases, see src\mol-model\structure\model\properties\atomic\bonds.ts There is a comment to interpret connect records (if given in a non-standard way) in PDB files to assign bond orders,...