B. Arman Aksoy

also relevant: #490

this is partially addressed by PR https://github.com/hammerlab/cycledash/pull/750; but we probably have to be more specific about the annotations we want -- maybe we can enter them as separate issues and...

I didn't even know that Cycledash could handle assemblies other than human. In that sense, I agree that `contig` is the right term to use, but it is one of...

Hi @cwuensch - thanks for catching this issue. I was just looking at this and realized that this is actually not a pileup.js bug but a data issue: the BigBed...

@cwuensch: Nope, looks like they have recently switched to another BigBed file (`gencode.bb`) for the visualization of genes: ``` $ curl -s "http://www.biodalliance.org/" |grep ".bb" uri: '//www.biodalliance.org/datasets/hg18ToHg19.bb', bwgURI: '//www.biodalliance.org/datasets/gencode.bb', bwgURI:...

Hi @emreatbina, That exception seems to be raised by `jbinary` internal checks and looks like it is related to this: https://github.com/hammerlab/pileup.js/blob/master/src/main/data/formats/bamTypes.js#L71 According to the `BAM` specification, those 4 chars should...

@emreatbina: hmm, that is really weird. We have been testing those parsing APIs so hard that it is sad to see this failure, but we first have to look for...

Sorry for the late reply, @emreatbina; but at this point, I have no idea what might be going wrong. The only possibility of getting such inconsistent responses from the server...

Hi @nuno-agostinho — we don't hide the scrollbars by default, but the scrolling behaviour might be somewhat odd on OS X due to its "hide-scroll-bar-by-default-everywhere" policy. Is this what you...

argh, my bad — I didn't see that "horizontal" in the title. This was something we wanted to do in the past but other things had higher priority to them....