B. Arman Aksoy

@tavinathanson: definitely huge overlap between epidisco and cohorts. epidisco does neoepitope prediction, but the versioning conflicts you mentioned might become an issue. When we were discussing this issue during the...

+1 for this.

GNU `parallel` can do that for you: https://www.gnu.org/software/parallel/parallel_tutorial.html#Remote-execution Wouldn't try to implement something from scratch since I have been trying out different options to do this in a nice and...

Looks like Google is trying hard to scare people away from using the `container-vm` from now on. Just got this e-mail: > Dear Google Container Engine Customer, > > We...

I also had similar issues where the `describe` log showed a successful allocation of resources and the initiation of the job, yet the job fails without any kubernetes log. For...

Turns out strelka doesn't provide data on all the samples it lists in the header and instead creates empty columns for these additional samples. This is problematic to parse, causing...

Once #820 is merged, we can easily start showing the release field on the examine page.

@iskandr: what is the summary statistics that you would like to show if we have the RNA-bam feature implemented? Some measure of within-sample normalized expression for a variant? Or simply...

1) Definitely a go-go; 2) We have to define what a locus is for our purposes. Do you mean counting all reads falling into the gene locus for the corresponding...

@ihodes: OK for me to start working on this? I am planning to add an RNASeq BAM file field to runs as a first step just to quickly get it...