dynamo-release
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aristoteleo
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
- [ ] I am sure this issue is not simply a general python programming problem (if so, please google the answers). - [ ] I have searched github issues...
- [ ] The 3D vectors implemented by Plotly don't support customized coloring. Now it utilizes the [built-in color scales](https://plotly.com/python/builtin-colorscales/) for continuous coloring. We should support coloring by a given...
the original link https://pitt.box.com/v/hematopoiesis-processed does not work for me. Any body can share it in Dropbox or Google Drive? Thanks.
Hi Dynamo team, thank you so much for developing this great tool. I have been playing around with the in-silico perturbation function and I came to wonder if it would...
Hi, Thank you to your team for developing dynamo, I encountered an error while running dynamo. I installed the latest version of dynamo(pip install git+https://github.com/aristoteleo/dynamo-release@master) and follow the Typical workflow...
Dear Xiaojie, My data is pulse-chase data from scNT-seq, three temperatures were used for processing, but an error occurs when running dyn. tl. dynamics(adata, group = 'temp'), here's my run...
Check code quality with `black` and `isort` in workflow instead of flake8.
Investigating the possibility of automatically generating release notes. The guide is [here](https://docs.github.com/en/repositories/releasing-projects-on-github/automatically-generated-release-notes).
- [ ] Allow chunked input - [ ] Speed up with techniques like multiprocessing, numba - [ ] Modualize `select_genes_monocle`
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Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses