dynamo-release
dynamo-release copied to clipboard
ModuleNotFoundError: No module named 'hnswlib' when running dyn.tl.cell_velocities(adata_hsc_raw)
Hi,
Thank you to your team for developing dynamo, I encountered an error while running dynamo.
I installed the latest version of dynamo(pip install git+https://github.com/aristoteleo/dynamo-release@master) and follow the Typical workflow in dyamo Tutorial:
When I ran dyn.tl.cell_velocities(adata_hsc_raw) it turns :ModuleNotFoundError: No module named 'hnswlib'
By the way, previously I ran dynamo with version 1.3.2 it is normal.
How do I solve it?
Thanks a lot!
Thank you for reporting this issue. This seems to be a bug in the latest version of Dynamo. hnswlib is an awesome package we added recently for faster nearest neighbors calculation. I will set it to be an optional dependency to address the issue. Before that, you can just install hnswlib.
This issue is stale because it has been open 90 days with no activity. Remove stale label or comment or this will be closed in 14 days